SymMol
A program to symmetrize a group of atoms within a given tolerance.
Written by Tullio Pilati and Alessandra Forni.
It is incorporated into the WinGXpackage.
ORTEP III
The Oak Ridge Thermal Ellipsoid Plot (ORTEP) program is a computer program,
written in Fortran, for drawing crystal structure illustrations. Ball-and-stick
type illustrations of a quality suitable for publication are produced with
either spheres or thermal-motion probability ellipsoids, derived from
anisotropic temperature factor parameters, on the atomic sites. The program
also produces stereoscopic pairs of illustrations which aid in the visualization
of complex arrangements of atoms and their correlated thermal motion patterns.
RasMol
A Molecular Graphics Visualisation Tool.
RasMol is a molecular graphics program intended for the visualisation of
proteins, nucleic acids and small molecules. The program is aimed at display,
teaching and generation of publication quality images.
Currently supported input file formats include Brookhaven Protein
Databank (PDB), Tripos' Alchemy and Sybyl Mol2 formats, Molecular Design
Limited's (MDL) Mol file format, Minnesota Supercomputer Center's (MSC)
XMol XYZ format and CHARMm format files.
Written by Roger Sayle (BioMolecular Structures Group, Glaxo Research & Development, Greenford, Middlesex, UK)
Xmgr
ACE/gr is a 2D plotting tool for X
Window System. It uses an OSF
Motif-based user interface, which is the reason why it's also known
as Xmgr.
A major part of ACE/gr was written by Paul
Turner who, unfortunately, does not have time to continue the development.
Since the version 4.00beta, ACE/gr has being developed by a voluntary
group of people.
PGPLOT Graphics Subroutine Library
The PGPLOT Graphics Subroutine Library is a Fortran- or C-callable,
device-independent graphics package for making simple scientific graphs.
It is intended for making graphical images of publication quality with minimum
effort on the part of the user. For most applications, the program can be
device-independent, and the output can be directed to the appropriate device
at run time.
Written by T.J. Pearson at California Institute of Technology.